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Unravelling the complexity of cold acclimation in plants


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Title: Unravelling the complexity of cold acclimation in plants
Authors: Aakash, Chawade
E-mail: aakash.chawade@gu.se
Issue Date: 19-May-2011
University: Göteborgs universitet. Naturvetenskapliga fakulteten
Institution: Department of Cell and Molecular Biology ; Institutionen för cell- och molekylärbiologi
Parts of work: I. Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors. BMC Plant Biol. 2010 May 12;10:86.
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II. In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control.Bioinformatics. 2009 Jun 1;25(11):1345-8.
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III. Identification of differentially expressed metabolites during cold acclimation in a winter oat model system. Unpublished.

IV. Development and characterization of an oat TILLING-population and identification of mutations in lignin and beta-glucan biosynthesis genes.BMC Plant Biol. 2010 May 12;10:86.
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Date of Defence: 2011-06-10
Disputation: kl 10.00, fredagen den 10 juni, 2011, Hörsalen, Institutionen för växt- och miljövetenskaper, Carl Skottsbergs gata 22B, Göteborg
Degree: Doctor of Philosophy
Publication type: Doctoral thesis
Keywords: bioinformatics
cold acclimation
winter
oat
arabidopsis
stress
freezing
genetic networks
metabolomics
Abstract: Many plants respond to low non-freezing temperatures by increasing their freezing tolerance in a process known as cold acclimation. Microarray studies have shown that hundreds of genes are differentially expressed during the cold acclimation process in Arabidopsis. To predict the gene regulatory interactions amongst these differentially expressed genes a rule based bioinformatics model was developed. The inferred regulatory network correctly identified several previously characterized interactio... more
ISBN: 978-91-633-8753-1
URI: http://hdl.handle.net/2077/25278
Appears in Collections:Doctoral Theses / Doktorsavhandlingar Institutionen för cell- och molekylärbiologi
Doctoral Theses from University of Gothenburg / Doktorsavhandlingar från Göteborgs universitet

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