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Microbial Biofilms in the Bioinformatics Era


Please use this identifier to cite or link to this item: http://hdl.handle.net/2077/42424

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Title: Microbial Biofilms in the Bioinformatics Era
Other Titles: Application of High-Throughput DNA Sequencing Technologies in the Metagenomic Study of Marine Biofilms
Authors: Sanli, Kemal
E-mail: kemalsanli1@gmail.com
Issue Date: 30-May-2016
University: University of Gothenburg. Faculty of Science
Institution: Department of Biological and Environmental Sciences ; Institutionen för biologi och miljövetenskap
Parts of work: FANTOM: Functional and taxonomic analysis of metagenomes. Sanli, K.*, Karlsson, F.*, Nookaew, I., and Nielsen, J., BMC Bioinformatics, 2011. 14(1), 38.
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PACFM: Pathway Analysis with Circos in Functional Metagenomics. Sanli, K., Sinclair, L., Nilsson, R. H., Mardinoglu, A., and Eiler, A. Manuscript.

Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities. Sanli, K., Bengtsson-Palme, J., Nilsson, R. H., Kristiansson, E., Alm-Rosenblad, M., Blanck, H., and Eriksson, K. M., Frontiers in Microbiology, 2013. 6: 1192.
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Triclosan induced community shifts point toward sulfur-based detoxification mechanisms in marine biofilms. Sanli, K., Sinclair, L., Corcoll, N., Nilsson, R. H., Johansson, C. H., Backhaus, T., and Eiler, A. Manuscript
Date of Defence: 2016-06-17
Disputation: 17th of June, 2016, at 10:00, in the lecture hall (Hörsalen) at the Department of Biological and Environmental Sciences, Carl Skottsbergs gata 22B, Gothenburg.
Degree: Doctor of Philosophy
Publication type: Doctoral thesis
Keywords: metagenomics, bioinformatics software, microbial biofilms, Next Generation Sequencing, pathway analysis, periphyton, marine biofilms, FANTOM, PACFM
Abstract: Adverse effects of anthropogenic impact on the environment have become conspicuous in the past century and among others include the gradual increase in the global CO2 levels, the contamination of air, soil and water by toxic chemicals, and the emergence of antimicrobial resistance among pathogenic microbial species. Microorganisms partake in an extreme diversity of activities in the environment, and hence, constitute the prime candidates to be investigated in understanding of the progressio... more
ISBN: 978-91-85529-91-9
978-91-85529-92-6
URI: http://hdl.handle.net/2077/42424
Appears in Collections:Doctoral Theses from University of Gothenburg / Doktorsavhandlingar från Göteborgs universitet
Doctoral Theses / Doktorsavhandlingar Institutionen för biologi och miljövetenskap

 

 

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